PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.067080.1
Common NameCsa_4G308500, LOC101209227
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family MYB
Protein Properties Length: 300aa    MW: 34358.4 Da    PI: 6.8073
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.067080.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.22.1e-092469346
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      WT+eE +++ +a +++  +   +W ++a++++ g+t  +++  +q 
   Cucsa.067080.1 24 QWTPEENKRFENALALYDEDtsdRWFKVAAMIP-GKTIGDVIKQYQE 69
                     6********************************.*********9996 PP

2Myb_DNA-binding46.68e-15133177347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ +++ + k++G+g+W+ I+r + ++Rt+ q+ s+ qky
   Cucsa.067080.1 133 PWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKY 177
                      7*******************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-41869IPR009057Homeodomain-like
PROSITE profilePS512936.362075IPR017884SANT domain
SMARTSM007171.4E-82173IPR001005SANT/Myb domain
SuperFamilySSF466896.14E-112377IPR009057Homeodomain-like
PfamPF002495.2E-82470IPR001005SANT/Myb domain
CDDcd001674.01E-72570No hitNo description
PROSITE profilePS5129420.282126182IPR017930Myb domain
SuperFamilySSF466892.0E-17128181IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-17129181IPR006447Myb domain, plants
SMARTSM007171.9E-12130180IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-13131177IPR009057Homeodomain-like
CDDcd001673.63E-11133178No hitNo description
PfamPF002493.5E-12133177IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEFLSPASYL RNSNWLFQET KGTQWTPEEN KRFENALALY DEDTSDRWFK VAAMIPGKTI  60
GDVIKQYQEL EEDVSDIEAG LIPIRGYANR HSFTLERVDS SHGFDGLSHF YGSGVKRGTS  120
TRPSDHERKK GIPWTEEEHR QFLMGLKKYG KGDWRNISRN FVTTRTPTQV ASHAQKYFIR  180
QLSGGKDKRR SSIHDITTVN LPDMKSPLGD SNRPPSPDPA AMATHLHQLS KMVDSTDQQF  240
DWESLNQVLD SSNGNMFMVM PSNGTQQQEQ NLLKETIIES PIAPYYTIFQ MQPMHQHYH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A5e-132287873RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00296DAPTransfer from AT2G38090Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818880.0LN681888.1 Cucumis melo genomic scaffold, anchoredscaffold00002.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147889.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-106DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0A0KXH80.0A0A0A0KXH8_CUCSA; DNA binding protein
STRINGPOPTR_0016s11980.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-113MYB family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]